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1

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

Köser, Claudio U., Holden, Matthew T.G., Ellington, Matthew J., Cartwright, Edward J.P., Brown, Nicholas M., Ogilvy-Stuart, Amanda L., Hsu, Li Yang, Chewapreecha, Claire, Croucher, Nicholas J., Harris

Journal:

New England Journal of Medicine

Year:

2012

Language:

english

File:

PDF, 488 KB

english, 2012

2

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

Bryant, Josephine, Chewapreecha, Claire, Bentley, Stephen D

Journal:

Future Microbiology

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

3

Genome Watch: Natural transformers

Chewapreecha, Claire

Journal:

Nature Reviews Microbiology

Year:

2012

Language:

english

File:

PDF, 263 KB

english, 2012

4

Your gut microbiota are what you eat

Chewapreecha, Claire

Journal:

Nature Reviews Microbiology

Year:

2013

Language:

english

File:

PDF, 578 KB

english, 2013

5

Dense genomic sampling identifies highways of pneumococcal recombination

Chewapreecha, Claire, Harris, Simon R, Croucher, Nicholas J, Turner, Claudia, Marttinen, Pekka, Cheng, Lu, Pessia, Alberto, Aanensen, David M, Mather, Alison E, Page, Andrew J, Salter, Susannah J, Har

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

6

Two-phase importance sampling for inference about transmission trees

Numminen, E., Chewapreecha, C., Siren, J., Turner, C., Turner, P., Bentley, S. D., Corander, J.

Journal:

Proceedings Biological Sciences

Year:

2014

Language:

english

File:

PDF, 768 KB

english, 2014

7

Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape

Croucher, N. J., Chewapreecha, C., Hanage, W. P., Harris, S. R., McGee, L., van der Linden, M., Song, J.-H., Ko, K. S., de Lencastre, H., Turner, C., Yang, F., Sa-Leao, R., Beall, B., Klugman, K. P.,

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 989 KB

english, 2014

8

Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages

Hilty, M., Wuthrich, D., Salter, S. J., Engel, H., Campbell, S., Sa-Leao, R., de Lencastre, H., Hermans, P., Sadowy, E., Turner, P., Chewapreecha, C., Diggle, M., Pluschke, G., McGee, L., Koseo lu Ese

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 3.15 MB

english, 2014

9

Climate induces seasonality in pneumococcal transmission

Numminen, Elina, Chewapreecha, Claire, Turner, Claudia, Goldblatt, David, Nosten, Francois, Bentley, Stephen D., Turner, Paul, Corander, Jukka

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

10

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

Chewapreecha, Claire, Marttinen, Pekka, Croucher, Nicholas J., Salter, Susannah J., Harris, Simon R., Mather, Alison E., Hanage, William P., Goldblatt, David, Nosten, Francois H., Turner, Claudia, Tur

Journal:

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

11

Pathogen hide-and-'seq'

Chewapreecha, Claire, Bénard, Angèle, Reuter, Sandra

Journal:

Nature Reviews Microbiology

Year:

2016

Language:

english

File:

PDF, 195 KB

english, 2016

12

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Lees, John A., Vehkala, Minna, Välimäki, Niko, Harris, Simon R., Chewapreecha, Claire, Croucher, Nicholas J., Marttinen, Pekka, Davies, Mark R., Steer, Andrew C., Tong, Steven Y. C., Honkela, Antti, P

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 395 KB

english, 2016

13

Global and regional dissemination and evolution of Burkholderia pseudomallei

Chewapreecha, Claire, Holden, Matthew T. G., Vehkala, Minna, Välimäki, Niko, Yang, Zhirong, Harris, Simon R., Mather, Alison E., Tuanyok, Apichai, De Smet, Birgit, Le Hello, Simon, Bizet, Chantal, May

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

14

Pneumococcal capsule synthesis locus cps as evolutionary hotspot with potential to generate novel serotypes by recombination.

Mostowy, Rafał J., Croucher, Nicholas J., De Maio, Nicola, Chewapreecha, Claire, Salter, Susannah J., Turner, Paul, Aanensen, David M., Bentley, Stephen D., Didelot, Xavier, Fraser, Christophe

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 9.75 MB

english, 2017

15

Erratum: Corrigendum: Climate induces seasonality in pneumococcal transmission

Numminen, Elina, Chewapreecha, Claire, Turner, Claudia, Goldblatt, David, Nosten, Francois, Bentley, Stephen D., Turner, Paul, Corander, Jukka

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 110 KB

english, 2016

16

Genome-wide epistasis and co-selection study using mutual information

Pensar, Johan, Puranen, Santeri, Arnold, Brian, MacAlasdair, Neil, Kuronen, Juri, Tonkin-Hill, Gerry, Pesonen, Maiju, Xu, Yingying, Sipola, Aleksi, Sánchez-Busó, Leonor, Lees, John A, Chewapreecha, Cl

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 4.33 MB

english, 2019

17

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

Chewapreecha, Claire, Mather, Alison E., Harris, Simon R., Hunt, Martin, Holden, Matthew T. G., Chaichana, Chutima, Wuthiekanun, Vanaporn, Dougan, Gordon, Day, Nicholas P. J., Limmathurotsakul, Direk,

Journal:

Communications Biology

Year:

2019

File:

PDF, 4.68 MB

2019